PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G216700.1
Common NameB456_006G216700, LOC105800310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 657aa    MW: 71410.4 Da    PI: 5.0442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G216700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12480525454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Gorai.006G216700.1 480 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAISYINEL 525
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-5879260IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.25476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-15479530No hitNo description
SuperFamilySSF474594.97E-19479550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-19480547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10480525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-17482531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MKDYGLAPTM NLWTDDNAPV MEAFMSSDLS SLWPPPLSSA STSTPAASAA GGGGGGHDLS  60
VSFLAQPQPS VSLLNQETLQ QRLQALIEGA RDCWTYAIFW QSSYDYSGAT VLGWGDGYYK  120
GEEDKGKGES KACSSSVAEQ EHRKKVLREL NSLISGSTAT ADDAVDEEVT DTEWFFLVSM  180
TQSFVTGSGL PGQALFNSSP VWVAGSDRLA SSMCERARQG QLFGLQTIVC IPSVNGVVEL  240
GSTELITQSS DLMNKVRILF NFNNGIEAGS WSVSNNTADQ GENDPSSLWI SEPNNGVEPK  300
DNNNNGNHNP RIQDPSTSSL TENPSSIHGG NQQQQPQGQS FRLNFSDYGF DGNSSVKNVK  360
FSAHLLKPES GEILNFGESK KSGNGNLFSA NSQLVVEENK KKRSPTSRGS NEDGMISFTS  420
GAVLPCSGVA KPGGCARDSD NSDIEASVVK EADSSRVVEP EKRPRKRGRK PANGREEPLN  480
HVEAERQRRE KLNQKFYALR AVVPNVSKMD KASLLGDAIS YINELRTKVQ DADSEKEELQ  540
KQLDEMKKQL ASKESCWTAP PPPDEDRNMS NKLIELDIDV KIIGLDAMIR IQCSKKNHPA  600
ARLMTALKEL DLDVHHASVS VVNDLMIQQA SVKMGSRFYT QEQLRIALAS KVGDAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-76662631195Transcription factor MYC3
4rs9_A1e-76662631195Transcription factor MYC3
4rqw_B1e-76662631195Transcription factor MYC3
4rqw_A1e-76662631195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461469KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486801.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0D2QEJ80.0A0A0D2QEJ8_G
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]